PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G215100.1
Common NameB456_010G215100, LOC105772137
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 225aa    MW: 24463.1 Da    PI: 10.2842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G215100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000275375123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C   F+++  L  H++ H
  Gorai.010G215100.1 53 FSCNYCRSKFTSPQALGGHQNAH 75
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.600.0014979IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.87E-65080No hitNo description
PROSITE profilePS5015710.725380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASEAANASR VESSNLSNDN RSSRESEIGL NLSTTMNPII TSSESQPEPE RTFSCNYCRS  60
KFTSPQALGG HQNAHRQERA LAKRLREIQA QTFTPPTYPH YPYPTLSSTP YQGSLNRSIL  120
GVRLGSMIRK PLHSWTLFGS GGYLSGHGYP RLAMRNHLPP SFNGRLSINN NGGIAISGPS  180
TSSRMVTGRG PLESFARNSQ ANVGANRPAT NQNDDSEIDL TLRL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448914.11e-163PREDICTED: zinc finger protein 7-like
TrEMBLA0A0D2VDB61e-163A0A0D2VDB6_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2459534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.17e-16zinc finger protein 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]